You are using phpFox version earlier than 4.6.0? Please refer instruction for this article here.

With our new theme manager , we changed how themes are handled. As such, the old import/export from 4.1.x was removed. If you already had a custom theme you had created and need to bring those changes into a v4.2.1 build 5 (and up) theme, this will show you how to do that. 

Creating a Theme for Merging

As you should not edit the default Bootstrap theme, you'll want to create a new theme first. (This is a good idea even if using one of the themes from the store)